{"id":16,"date":"2019-04-11T10:43:33","date_gmt":"2019-04-11T17:43:33","guid":{"rendered":"https:\/\/sites.lifesci.ucla.edu\/mcdb-shah\/?page_id=16"},"modified":"2025-08-01T12:13:07","modified_gmt":"2025-08-01T19:13:07","slug":"publications","status":"publish","type":"page","link":"https:\/\/sites.lifesci.ucla.edu\/mcdb-shah\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<ul>\n<li>Stubbert, C; Soe, C; Shah P. Long-term <em>ex ovo<\/em> culture of <em>Caenorhabditis elegans<\/em> embryos. bioRxiv: 2025.06.26.661779<\/li>\n<li>Waliman, M*; Johnson, R*; Natesan, G; Tan, S; Santella, A; Hong, R; Shah, P. Automated Cell Lineage Reconstruction using Label-Free 4D Microscopy. <i>Genetics.\u00a0<\/i>2023 228(2) iyae135<\/li>\n<li>Natesan, G; Hamilton, T; Deeds, E; Shah, P. Novel metrics reveal new structure and unappreciated heterogeneity in <em>C. elegans<\/em> development. <em>PLOS Computational Biology<\/em>. 2023 10.1371\/journal.pcbi.1011733<\/li>\n<li>Shah, P; Bao, Z; Zaidel-Bar, R. Visualizing and quantifying molecular and cellular processes in C. elegans using light microscopy. <em>Genetics<\/em>. 2022 Jun iyac068<\/li>\n<\/ul>\n<p>With our collaborators:<\/p>\n<ul>\n<li>Noblett, N; Roenspies, T; Kirezi C; Stubbert, C; Flibotte, S; Shah, P; Colavita, A. IPPK-1 and IP6 contribute to ventral nerve cord assembly in <em>C. elegans.\u00a0<\/em><em>Developmental Biology.\u00a0<\/em>526: 159-72. 2025 Oct.<\/li>\n<li>Sharmin, R; Elkhalil, A; Pena, S; Gaddipati, P; Clark, G; Shah, P; Pellegrino, M; Shaham, S; Ghose, P. Mitochondria transported by Kinesin 3 prevent localized calcium spiking to inhibit caspase-dependent specialized cell death. bioRxiv: 2025.01.08.631976<\/li>\n<\/ul>\n<p>From Pavak&#8217;s postdoc in the Bao Lab at MSKCC:<\/p>\n<ul>\n<li>Vorselen, D; Wang, Y; de Jesus, M; Shah, P; Footer, M; Huse, M; Cai, W; Theriot, J. Superresolved microparticle traction force microscopy reveals subcellular force patterns in immune cell-target interactions. <em>Nature Communications.\u00a0<\/em>11:20. 2020 Jan.<\/li>\n<li>Ghose, P; Rashid, A; Insley, P; Trivedi, M; Shah, P; Singhal, A; Lu, Y; Bao, Z; Shaham, S. EFF-1 fusogen promotes phagosome sealing during cell process clearance in <em>C. <\/em><em>elegans<\/em>. <em>Nature Cell Biology<\/em>. 20(4): 393-9. 2018 Mar.<\/li>\n<li>Shah, P; Santella, A; Jacobo, A; Siletti, K; Hudspeth, JA; Bao, Z. An <em>in toto <\/em>approach to dissecting cellular interactions in complex tissues. <em>Developmental Cell. <\/em>43(4): 530-540.e4. 2017 Nov.<\/li>\n<li>Shah, P*; Tanner, M*; Kovacevic, I; Rankin, A; Marshall, T; Noblett, N; Tran, N; Roenspies, T; Hung, J; Chen, Z; Slatculescu, C; Perkins, T; Bao, Z; Colavita, A. PCP and SAX-3\/Robo pathways cooperate to regulate convergent extension-based nerve cord assembly in <em>C.<\/em><em>\u00a0elegans. Developmental Cell. <\/em>41(2): 194-203. 2017 Apr.<\/li>\n<li>Du, Z; Santella, A; He, F; Shah, P; Kamikawa, Y; Bao, Z. The regulatory landscape of differentiation in a metazoan embryo. <em>Developmental Cell. <\/em>34(5): 592-607. 2016 Sep.<\/li>\n<li>Santella, A; Catena, R; Kovacevic, I; Shah, P; Yu, Z; Marquina-Solis, J; Kumar, A; Wu, Y; Schaff, J; Col\u00f3n-Ramos, D; Shroff, H; Mohler, W; Bao, Z. WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration. <em>BMC Bioinformatics. <\/em>16(1): 189. 2015 Jun.<\/li>\n<\/ul>\n<p>From Pavak&#8217;s graduate work in the Allbritton Lab at UNC \/ NCSU:<\/p>\n<ul>\n<li>Shah, P; Walker, M; Sims, C; Major, B; Allbritton N. Dynamics and evolution of \u03b2-catenin dependent Wnt signaling revealed through massively parallel clonogenic screening. <em>Integrative Biology. <\/em>6: 673-84. 2014 May<\/li>\n<li>Shah, P; Herrera-Loeza, S; Sims, C; Yeh, J; Allbritton, N. Small sample sorting of primary adherent cells by automated micropallet imaging and release. <em>Cytometry: Part A. <\/em>85(7): 642-9. 2014 Jul.<\/li>\n<li>Shah, P; Hughes, M; Wang, Y; Sims, C; Allbritton, N. Scalable synthesis of a biocompatible, transparent and superparamagnetic photoresist for microdevice fabrication. <em>Journal of Micromechanics and Microengineering<\/em>. 23(10):107002. 2013 Sep.<\/li>\n<li>Wang, Y; Ahmad, A; Shah, P; Sims, C; Magness, S; Allbritton, N. Capture and 3D culture of colonic crypts and colonoids in a microarray platform. <em>Lab on a Chip <\/em>13(23): 4991-7. 2013 Sep.<\/li>\n<li>Kovarik, M; Shah, P; Armistead, P; Allbritton, N. Microfluidic Chemical Cytometry of Peptide Degradation in Single Drug-Treated Acute Myeloid Leukemia Cells. <em>Analytical Chemistry. <\/em>85(10): 4991-4997. 2013 Apr.<\/li>\n<li>Kovarik, M; Ornoff, D; Melvin, A; Dobes, N; Wang, Y; Dickinson, A; Gach, P; Shah, P; Allbritton, N. Micro Total Analysis Systems: Fundamental Advances and Applications in the Laboratory, Clinic, and Field. <em>Analytical Chemistry. <\/em>85(2): 451-472. 2012 Nov.<\/li>\n<li>Wang, Y; Shah, P; Phillips, C; Sims, C; Allbriton, N. Trapping cells on a stretchable microwell array for single-cell analysis. <em>Analytical and Bioanalytical Chemistry, <\/em>402(3): 1065-1072. 2012 Jan.<\/li>\n<\/ul>\n<p>* Equal contribution<\/p>\n<p>&nbsp;<\/p>\n<p>Full list of publications on <a href=\"https:\/\/scholar.google.com\/citations?user=-isvl7kAAAAJ&amp;hl=en&amp;oi=ao\">Google Scholar<\/a><br \/>\nPavak&#8217;s profile on <a href=\"https:\/\/orcid.org\/0000-0002-2603-5995\">ORCID<\/a><\/p>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Stubbert, C; Soe, C; Shah P. Long-term ex ovo culture of Caenorhabditis elegans embryos. bioRxiv: 2025.06.26.661779 Waliman, M*; Johnson, R*; Natesan, G; Tan, S; Santella, A; Hong, R; Shah, P. Automated Cell Lineage Reconstruction using Label-Free 4D Microscopy. Genetics.\u00a02023 228(2) iyae135 Natesan, G; Hamilton, T; Deeds, E; Shah, P. Novel metrics reveal new structure and &hellip; <a href=\"https:\/\/sites.lifesci.ucla.edu\/mcdb-shah\/publications\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">Publications<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":365,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-16","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/sites.lifesci.ucla.edu\/mcdb-shah\/wp-json\/wp\/v2\/pages\/16","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/sites.lifesci.ucla.edu\/mcdb-shah\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.lifesci.ucla.edu\/mcdb-shah\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.lifesci.ucla.edu\/mcdb-shah\/wp-json\/wp\/v2\/users\/365"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.lifesci.ucla.edu\/mcdb-shah\/wp-json\/wp\/v2\/comments?post=16"}],"version-history":[{"count":13,"href":"https:\/\/sites.lifesci.ucla.edu\/mcdb-shah\/wp-json\/wp\/v2\/pages\/16\/revisions"}],"predecessor-version":[{"id":158,"href":"https:\/\/sites.lifesci.ucla.edu\/mcdb-shah\/wp-json\/wp\/v2\/pages\/16\/revisions\/158"}],"wp:attachment":[{"href":"https:\/\/sites.lifesci.ucla.edu\/mcdb-shah\/wp-json\/wp\/v2\/media?parent=16"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}