UCLA

Knowles B, Bonachela JA, Behrenfeld MJ, Bondoc KG, Cael BB, Carlson CA, Cieslik N*, Diaz BP, Fuchs HL, Graff JR, Grasis J, Halsey H, Haramaty L, Johns CT, Natale F, Nissimov JI, Schieler B, Thamatrakoln K, Thingstad TF, Våge S, Watkins C, Westberry T, and KD Bidle. Temperate infection in a virus-host system previously known for virulent dynamics. Nature Communications 11(4626): 1-13. doi: 0.1038/s41467-020-18078-4

Boling L, Cuevas DA, Kang HS, Knowles B, Maughan H, McNair K, Rojas MI, Sanchez SE, Smurthwaite C, and F Rohwer. Dietary anti-microbials and prophage inducers – towards landscaping of the human gut microbiome. 2020. Gut Microbes. doi: 0.1080/19490976.2019.1701353

Nissimov JI, Talmy D, Haramaty L, Fredricks H, Zelzion E, Knowles B, Eren M, Vandzura R, Laber C, Schieler B, Johns C, More KD, Coolen MJL, Follows MJ, Bhattacharya D, Van Mooy BAS, and K.D. Bidle. 2019. Biochemical diversity of glycosphingolipid biosynthesis as a driver of Coccolithovirus competitive ecology. Environmental Microbiology 21(6):2182-2197

Thamatrakoln K, Talmy D, Haramaty L, Maniscalco C, Latham J, Knowles B, Natale N, Coolen MJL, Follows MJ, and KD Bidle. 2018. Light regulation of coccolithophore host-virus interactions. New Phycologist, doi:10.1111/nph.15459.

Knowles B, Bailey B, Boling L, Breitbart M, Cobián-Güemes A, del Campo J, Edwards R, Felts B, Grasis J, Haas AF, Katira P, Wegley Kelly L, Luque A, Nulton J, Paul L, Peters G, Robinett N, Sandin S, Segall A, Silveira C, Youle M, and F Rohwer. 2017. Variability and host density independence in inductions-based estimates of environmental lysogeny. Nature Microbiology 2, 17064.

Knowles B and F Rohwer. 2017. Reply to Brief Communication Arising: Lysis, lysogeny, and virus-microbe ratios. Nature 549: E3-E4.

Roach T, Abieri M, George E, Knowles B, Smurthwaite C, Haas A, and F Rohwer. 2017. Microbial bioenergetics of coral-algal interactions. PeerJ 5: e3423.

Knowles B, Silveira C, Bailey B, Barott K, Cantu V, Cobián-Güemes A, Coutinho F, Dinsdale E, Felts B, Furby K, George E, Green K*, Gregoracci G, Haas A, Haggerty J, Hester E, Hisakawa N, Kelly LW, Lim YW, Little M, Luque A, McDole-Somera T, McNair K, de Oliveira L, Quistad S, Robinett N, Sala E, Salamon P, Sanchez S, Sandin S, Silva G, Smith J, Sullivan C, Thompson C, Vermeij M, Youle M, Young C, Zgliczynski B, Brainard R, Edwards R, Nulton J, Thompson F, and F Rohwer. 2016. Lytic to temperate switching of viral communities. Nature 531; 466–470.

Haas A, Fairoz M, Kelly LW, Nelson C, Dinsdale E, Edwards R, Giles S, Hatay M, Hisakawa N, Knowles B, Lim YW, Maughan H, Pantos O, Roach T, Sanchez S, Silveira C, Sandin S, Smith J, and F Rohwer. 2016. Global microbialization of coral reefs. Nature Microbiology 1: 16042.

Roitman S, Flores-Uribe J, Philosof A, Knowles B, Rohwer F, Ignacio-Espinoza J, Sullivan M, Acinas S, Cornejo-Castillo F, Sánchez P, Dupont C, and O Beja. 2015. Closing the gaps on the viral photosystem photosystem-I psaDCAB gene organization. Environmental Microbiology, doi:10.1111/1462-2920.13036.

Haas A, Knowles B, Lim YW, McDole-Somera T, Kelly LW, Hatay M, and F Rohwer. 2014. Unraveling the unseen players in the ocean – a field guide to water chemistry and marine microbiology. Journal of Visualized Experiments (JoVE); e52131, doi:10.3791/52131.

Knowles B. 2014. March from the sea: A brief history of environmental phage ecology from marine to human ecosystems. In Rohwer F, Youle M, Maughan H, and N Hisakawa (Eds.) Life in Our Phage World, Wholon Publishing, San Diego.