Tracy Johnson* – Molecular Biology Institute

Publications:

Johnson TL, Clemens S. Differential dopamine modulation of spinal reflex amplitudes is associated with the presence or absence of the autonomic nervous system. Neurosci Lett. 2021 01 18; 742:135514. view on PubMed

Barber PH, Hayes TB, Johnson TL, Márquez-Magaña L, 10,234 signatories. Systemic racism in higher education. Science. 2020 Sep 18; 369(6510):1440-1441. view on PubMed

Lyu S, Doroodchi A, Xing H, Sheng Y, DeAndrade MP, Yang Y, Johnson TL, Clemens S, Yokoi F, Miller MA, Xiao R, Li Y. BTBD9 and dopaminergic dysfunction in the pathogenesis of restless legs syndrome. Brain Struct Funct. 2020 Jul; 225(6):1743-1760. view on PubMed

Leung CS, Douglass SM, Morselli M, Obusan MB, Pavlyukov MS, Pellegrini M, Johnson TL. H3K36 Methylation and the Chromodomain Protein Eaf3 Are Required for Proper Cotranscriptional Spliceosome Assembly. Cell Rep. 2019 06 25; 27(13):3760-3769.e4. view on PubMed

Davis-Turak J, Johnson TL, Hoffmann A. Mathematical modeling identifies potential gene structure determinants of co-transcriptional control of alternative pre-mRNA splicing. Nucleic Acids Res. 2019 Feb 20; 47(3):1602-1603. view on PubMed

Edwards SR, Johnson TL. Intron RNA sequences help yeast cells to survive starvation. Nature. 2019 01; 565(7741):578-579. view on PubMed

Leung CS, Johnson TL. The Exon Junction Complex: A Multitasking Guardian of the Transcriptome. Mol Cell. 2018 12 06; 72(5):799-801. view on PubMed

Carpentier WR, Charles JB, Shelhamer M, Hackler AS, Johnson TL, Domingo CMM, Sutton JP, Scott GBI, Wotring VE. Biomedical findings from NASA's Project Mercury: a case series. NPJ Microgravity. 2018; 4:6. view on PubMed

Rinehart DJ, Oronce C, Durfee MJ, Ranby KW, Batal HA, Hanratty R, Vogel J, Johnson TL. Identifying Subgroups of Adult Superutilizers in an Urban Safety-Net System Using Latent Class Analysis: Implications for Clinical Practice. Med Care. 2018 01; 56(1):e1-e9. view on PubMed

Fischer HH, Moore SL, Johnson TL, Everhart RM, Batal H, Davidsoni AJ. Appointment reminders by text message in a safety net health care system: a pragmatic investigation. EGEMS (Wash DC). 2017 Sep 04; 5(1):20. view on PubMed

Venkataramanan S, Douglass S, Galivanche AR, Johnson TL. The chromatin remodeling complex Swi/Snf regulates splicing of meiotic transcripts in Saccharomyces cerevisiae. Nucleic Acids Res. 2017 Jul 27; 45(13):7708-7721. view on PubMed

Awad AM, Venkataramanan S, Nag A, Galivanche AR, Bradley MC, Neves LT, Douglass S, Clarke CF, Johnson TL. Chromatin-remodeling SWI/SNF complex regulates coenzyme Q6 synthesis and a metabolic shift to respiration in yeast. J Biol Chem. 2017 09 08; 292(36):14851-14866. view on PubMed

Neves LT, Douglass S, Spreafico R, Venkataramanan S, Kress TL, Johnson TL. The histone variant H2A.Z promotes efficient cotranscriptional splicing in S. cerevisiae. Genes Dev. 2017 04 01; 31(7):702-717. view on PubMed

Hossain MA, Claggett JM, Edwards SR, Shi A, Pennebaker SL, Cheng MY, Hasty J, Johnson TL. Posttranscriptional Regulation of Gcr1 Expression and Activity Is Crucial for Metabolic Adjustment in Response to Glucose Availability. Mol Cell. 2016 05 05; 62(3):346-358. view on PubMed

Johnson TL, Ares M. SMITten by the Speed of Splicing. Cell. 2016 Apr 07; 165(2):265-7. view on PubMed

Johnson TL, Rinehart DJ, Durfee J, Brewer D, Batal H, Blum J, Oronce CI, Melinkovich P, Gabow P. For many patients who use large amounts of health care services, the need is intense yet temporary. Health Aff (Millwood). 2015 Aug; 34(8):1312-9. view on PubMed

Johnson TL, Brewer D, Estacio R, Vlasimsky T, Durfee MJ, Thompson KR, Everhart RM, Rinehart DJ, Batal H. Augmenting Predictive Modeling Tools with Clinical Insights for Care Coordination Program Design and Implementation. EGEMS (Wash DC). 2015; 3(1):1181. view on PubMed

Davis-Turak JC, Allison K, Shokhirev MN, Ponomarenko P, Tsimring LS, Glass CK, Johnson TL, Hoffmann A. Considering the kinetics of mRNA synthesis in the analysis of the genome and epigenome reveals determinants of co-transcriptional splicing. Nucleic Acids Res. 2015 Jan; 43(2):699-707. view on PubMed

Merkhofer EC, Hu P, Johnson TL. Introduction to cotranscriptional RNA splicing. Methods Mol Biol. 2014; 1126:83-96. view on PubMed

Hossain MA, Johnson TL. Using yeast genetics to study splicing mechanisms. Methods Mol Biol. 2014; 1126:285-98. view on PubMed

Johnson TL, Tulis DA, Keeler BE, Virag JA, Lust RM, Clemens S. The dopamine D3 receptor knockout mouse mimics aging-related changes in autonomic function and cardiac fibrosis. PLoS One. 2013; 8(8):e74116. view on PubMed

Virag JA, Anderson EJ, Kent SD, Blanton HD, Johnson TL, Moukdar F, DeAntonio JH, Thayne K, Ding JM, Lust RM. Cardioprotection via preserved mitochondrial structure and function in the mPer2-mutant mouse myocardium. Am J Physiol Heart Circ Physiol. 2013 Aug 15; 305(4):H477-83. view on PubMed

Brangwynne CP, Johnson TL. The micro and macro of RNA function. Mol Biol Cell. 2013 Mar; 24(6):679. view on PubMed

Hossain MA, Chung C, Pradhan SK, Johnson TL. The yeast cap binding complex modulates transcription factor recruitment and establishes proper histone H3K36 trimethylation during active transcription. Mol Cell Biol. 2013 Feb; 33(4):785-99. view on PubMed

Merkhofer EC, Johnson TL. U1 snRNA rewrites the "script". Cell. 2012 Jul 06; 150(1):9-11. view on PubMed

Johnson TL, Vilardell J. Regulated pre-mRNA splicing: the ghostwriter of the eukaryotic genome. Biochim Biophys Acta. 2012 Jun; 1819(6):538-45. view on PubMed

Baumgartner BL, Bennett MR, Ferry M, Johnson TL, Tsimring LS, Hasty J. Antagonistic gene transcripts regulate adaptation to new growth environments. Proc Natl Acad Sci U S A. 2011 Dec 27; 108(52):21087-92. view on PubMed

Hossain MA, Rodriguez CM, Johnson TL. Key features of the two-intron Saccharomyces cerevisiae gene SUS1 contribute to its alternative splicing. Nucleic Acids Res. 2011 Oct; 39(19):8612-27. view on PubMed

McKay SL, Johnson TL. An investigation of a role for U2 snRNP spliceosomal components in regulating transcription. PLoS One. 2011 Jan 24; 6(1):e16077. view on PubMed

Gunderson FQ, Merkhofer EC, Johnson TL. Dynamic histone acetylation is critical for cotranscriptional spliceosome assembly and spliceosomal rearrangements. Proc Natl Acad Sci U S A. 2011 Feb 01; 108(5):2004-9. view on PubMed

McKay SL, Johnson TL. A bird's-eye view of post-translational modifications in the spliceosome and their roles in spliceosome dynamics. Mol Biosyst. 2010 Nov; 6(11):2093-102. view on PubMed

Buschemeyer WC, Klink JC, Mavropoulos JC, Poulton SH, Demark-Wahnefried W, Hursting SD, Cohen P, Hwang D, Johnson TL, Freedland SJ. Effect of intermittent fasting with or without caloric restriction on prostate cancer growth and survival in SCID mice. Prostate. 2010 Jul 01; 70(10):1037-43. view on PubMed

Gunderson FQ, Johnson TL. Acetylation by the transcriptional coactivator Gcn5 plays a novel role in co-transcriptional spliceosome assembly. PLoS Genet. 2009 Oct; 5(10):e1000682. view on PubMed

Hossain MA, Claggett JM, Nguyen T, Johnson TL. The cap binding complex influences H2B ubiquitination by facilitating splicing of the SUS1 pre-mRNA. RNA. 2009 Aug; 15(8):1515-27. view on PubMed

Cheng CS, Johnson TL, Hoffmann A. Epigenetic control: slow and global, nimble and local. Genes Dev. 2008 May 01; 22(9):1110-4. view on PubMed

Davern M, Lepkowski J, Call KT, Arnold N, Johnson TL, Goldsteen K, Todd-Malmlov A, Blewett LA. Telephone service interruption weighting adjustments for state health insurance surveys. Inquiry. 2004; 41(3):280-90. view on PubMed

Gruber HE, Johnson TL, Leslie K, Ingram JA, Martin D, Hoelscher G, Banks D, Phieffer L, Coldham G, Hanley EN. Autologous intervertebral disc cell implantation: a model using Psammomys obesus, the sand rat. Spine (Phila Pa 1976). 2002 Aug 01; 27(15):1626-33. view on PubMed

Keville T, Johnson TL, Epstein SS, Podhorin R, Swanston SF. Women's Health Law Symposium, Rutgers School of Law-Newark, April 6, 1994. Women's Rights Law Report. 1994; 16(1):17-41. view on PubMed

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